rs50929025 SNP Detail

Summary

• ID
  rs50929025
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82603199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAGTGGC TCCCCAGAGC
  TGGTGCTTTT AAGAACCCTG TTTCCTCTCA GAGCCCAGGG AGAGTCCAAG GACATGGCGC
  ATCTGGAAGT GGGACTGCAG GAGTTCTCTG GTGGCCTCGT GCTGTCCCTC TGGCCACTTC
  TCATGGTGGG GTGGTCAGCG GCAGCTCGCC ATGGCAGTGC CCATTGGTAC ACACTAACCT
  C
  GGTGGAAAAA TAACCATTCC CTGCCTCCTA GAAAGGACTC ATTCTTAGCT TTAGGGGGGT
  TCCTGTCACT GAATCGAGTC GCTGCCCTGG ATGCAGGGCT GGCCTGGGCG ACGCTCCAGG
  GATGAGGAGC TGAGAACCCC AGTCTAATAA TGTCCATCGA CACCTCCTTA TCCCTCTAAC
  GTACTATGTC TTTTGATTTA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147616973	ENSMUSSNP6784336	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50929025					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82603199 () rs orientation: forward

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	1386 bp proximal
Gm58829	predicted gene, 58829	within coordinates
Mbp	myelin basic protein	within coordinates
Rr541827	regulatory region 541827	939 bp distal
Tssr152152	transcription start site region 152152	949 bp downstream
Tssr152153	transcription start site region 152153	825 bp downstream
Tssr152154	transcription start site region 152154	802 bp downstream
Tssr152155	transcription start site region 152155	766 bp downstream
Tssr152156	transcription start site region 152156	697 bp downstream
Tssr152157	transcription start site region 152157	619 bp downstream
Tssr152158	transcription start site region 152158	582 bp downstream
Tssr152159	transcription start site region 152159	558 bp downstream
Tssr152160	transcription start site region 152160	512 bp downstream
Tssr152161	transcription start site region 152161	496 bp downstream
Tssr152162	transcription start site region 152162	475 bp downstream
Tssr152163	transcription start site region 152163	458 bp downstream
Tssr152164	transcription start site region 152164	413 bp downstream
Tssr152165	transcription start site region 152165	340 bp downstream
Tssr152166	transcription start site region 152166	304 bp downstream
Tssr152167	transcription start site region 152167	272 bp downstream
Tssr152168	transcription start site region 152168	243 bp downstream
Tssr152169	transcription start site region 152169	190 bp downstream
Tssr152170	transcription start site region 152170	82 bp downstream
Tssr152171	transcription start site region 152171	38 bp downstream
Tssr152172	transcription start site region 152172	51 bp upstream
Tssr152173	transcription start site region 152173	74 bp upstream
Tssr152174	transcription start site region 152174	92 bp upstream
Tssr152175	transcription start site region 152175	115 bp upstream
Tssr152176	transcription start site region 152176	324 bp upstream
Tssr152177	transcription start site region 152177	492 bp upstream
Tssr154083	transcription start site region 154083	844 bp upstream
Tssr154084	transcription start site region 154084	790 bp upstream
Tssr154085	transcription start site region 154085	533 bp upstream
Tssr154086	transcription start site region 154086	within coordinates
Tssr154087	transcription start site region 154087	209 bp downstream
Tssr154088	transcription start site region 154088	249 bp downstream
Tssr154089	transcription start site region 154089	360 bp downstream
Tssr154090	transcription start site region 154090	432 bp downstream