rs50929173 SNP Detail

Summary

• ID
  rs50929173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:95260516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAAAACA ATGTTGTTTT
  TCTTGATGAT ATGCAGCCAG GAGAAGTTTT TTAATTAAAA AAAAAAAAAA GGCATCAATT
  GGCTGAGGCC GGGGCTGTCA CAGCAGGTGT GACCTGCGTG ACTCTGGGTG ACAGGCTGCA
  CCAGAGCAAA GCAGGATACA GATGTGATGG GGCTCTGCAT GGCTGCACAT GGGAGGGTGC
  Y
  TGGGTGCCTG TCCTTTACAT CGCCCCCTCC CCAGGAACGC CACCAGCCAG CACAGAGAGC
  TGAAGCTAAC TAGGACCTAG TACCTATGGC TGTATGGCCA ATTTGAATCG AGGTAACCAA
  GAAAACTAAA GAAAAAGAAA AATCAAATCA AGATCTTGTT TTCAAATGCT CATTAAAGGG
  GCTGGGGAGA TGGCTCAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60247397	NES15746462	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50929173					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60247397	NES15746462	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:95260516 () rs orientation: forward

Symbol	Name	Function Class
Erg	ETS transcription factor	within coordinates
Gm56622	predicted gene, 56622	528 bp upstream
Rr520320	regulatory region 520320	539 bp distal
Rr520321	regulatory region 520321	within coordinates
Tssr142258	transcription start site region 142258	634 bp upstream
Tssr142259	transcription start site region 142259	559 bp upstream
Tssr142260	transcription start site region 142260	273 bp upstream