rs50930002 SNP Detail

Summary

• ID
  rs50930002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:79627797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACAGAGGC ATGGGCTCCC GAGGATCGCG GGCTCCATGT
  TCCCGTACCC CGCAAGCAGC GGTGCTTGGC CCAGCCTGGA CCCGAAGCAG CTCGGACTAC
  Y
  CCGAGGGGAG GACTGCAGGG ACCCGCTGAG CCCGGCGCCG GGGTTCCGGC GACTCGGCCG
  GGGAACTTTC TGGAAAGCTC CCGCAGTGGG GAGCTCCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss139812880	ENSMUSSNP5909178	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50930002					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79627797 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6774	CpG island 6774	within coordinates
Naa16	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	within coordinates
Rr404230	regulatory region 404230	289 bp upstream
Rr496090	regulatory region 496090	within coordinates
Rr496091	regulatory region 496091	346 bp proximal
Rr496092	regulatory region 496092	411 bp proximal
Rr496093	regulatory region 496093	434 bp proximal
Tssr129900	transcription start site region 129900	936 bp upstream
Tssr129901	transcription start site region 129901	282 bp downstream
Tssr129902	transcription start site region 129902	309 bp downstream