rs50930853 SNP Detail

Summary

• ID
  rs50930853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46654085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATT AGGCCCATAA GGGAGTGGCA
  Y
  GATTAGGAGG TGTGGCTTTC TTAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148973515	ENSMUSSNP6857737	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss324333679	CHEV_13_46595978	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50930853					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46654085 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	1294 bp upstream
Cpgi5539	CpG island 5539	1174 bp proximal
Gm35110	predicted gene, 35110	within coordinates
Rr478915	regulatory region 478915	1068 bp proximal
Rr478916	regulatory region 478916	1250 bp proximal
Rr478917	regulatory region 478917	1351 bp proximal
Rr478918	regulatory region 478918	1796 bp proximal
Tssr119597	transcription start site region 119597	1250 bp upstream
Tssr119598	transcription start site region 119598	1289 bp upstream
Tssr119599	transcription start site region 119599	1428 bp upstream
Tssr119600	transcription start site region 119600	1440 bp upstream
Tssr119601	transcription start site region 119601	1504 bp upstream
Tssr119602	transcription start site region 119602	1532 bp upstream