rs50934294 SNP Detail

Summary

• ID
  rs50934294
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126072467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAGAAAG AAGAGGCACA
  TACACTGAGT TACTGTAGAA GTGAGATTGA GTTATATCTC AGCCCAGGCC AGGGACTCCC
  CTCCAGGCTC CTCAGAGAGC AACAGGCGAA GAGAACTAAA CTGTTTTGCC CTCTTCAAGA
  TCAATAACCC TCATATACCC CAGGGATGAA GGATGCTAAG CCCAATCCTG CTGCCTTTGT
  C
  ACCCCTCTCC CTGTTGTGGG ACCCAGGAAA GGGCCTTGGA GCATCTTACC CCACAGGGGA
  CTCTTAAGAT CACTGCCATC CCTTCTCTAA GACAAAACCT TCCCTAACTA TCACACATTT
  TAAGTGTGCC ATTCCAGAGG GCTCTACAAG GTCATTTTAC CTTTCCTTAG ACAACTTACT
  AACCTCTTAC AGATGAGGAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145873621	ENSMUSSNP692660	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50934294					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126072467 () rs orientation: forward

Symbol	Name	Function Class
C530001K22Rik	RIKEN cDNA C530001K22 gene	1900 bp upstream
Cpgi19695	CpG island 19695	409 bp distal
Cpgi19696	CpG island 19696	1185 bp proximal
Gm73863	predicted gene, 73863	1819 bp upstream
Rr655501	regulatory region 655501	802 bp proximal
Rr655502	regulatory region 655502	1517 bp proximal
Sh2b1	SH2B adaptor protein 1	within coordinates
Tssr74717	transcription start site region 74717	1806 bp upstream
Tssr74718	transcription start site region 74718	900 bp upstream
Tssr74719	transcription start site region 74719	858 bp upstream
Tssr74720	transcription start site region 74720	1639 bp downstream
Tssr74721	transcription start site region 74721	1760 bp downstream
Tssr74722	transcription start site region 74722	1787 bp downstream