rs50934578 SNP Detail

Summary

• ID
  rs50934578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:69196626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTCTGGCA CCTGGAGCTC ATTTAGCAGG CAGACATGGT
  TTTCCAGTCT TACATATACA GGCTGTCTTG AATGCGGGAT GCTGCGGGAG TACGCAGCCC
  R
  GAACTACGAC CTTGGATGCT GTGAGCTGGG TGAGTCCTGA AAGTCTTACG AGGGGGCTTG
  CTCCGTCCCA AAACTGGTGT CAGTTCCGGG CCTGGGGGCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61417124	NES16801209	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs50934578					SNP	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61417124	NES16801209	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69196626 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21987	CpG island 21987			within coordinates
Rora	RAR-related orphan receptor alpha			Coding-NonSynonymous
				Intron
Rr682144	regulatory region 682144			within coordinates
Rr682145	regulatory region 682145			349 bp proximal
Tssr85839	transcription start site region 85839			940 bp downstream
Tssr85840	transcription start site region 85840			497 bp upstream
Tssr85841	transcription start site region 85841			521 bp upstream
Tssr85842	transcription start site region 85842			558 bp upstream
Tssr85843	transcription start site region 85843			565 bp upstream