rs50934877 SNP Detail

Summary

• ID
  rs50934877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:94203117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAATGAG CAACTCTATC
  TGAAGTAATA GGTGGACAGA AATGGACATC AAAGGACCCC CATCCTTCAA GGACGGGCTG
  GGATTTGATT TAAGAAGAGT TGGATGATTA AGGCAGCAGC TTTGCCTATC ATTAGAACAA
  TCCAGCCAGC CTCCTCTTCT ACAGATGCAG GATACATCTT AACTGCGCCT TAAGGGCCAC
  R
  TCAGCCTGGG AAGTGTGCAG TGGGAGTTGG TTGGTGTGGT GAGATGGGGA TGGATGTTGC
  AGGAAGAGTG GGCAGTACAG GGCGGGACCA GACCTCTGAG CTGCACTCTG CAAAGGTTCC
  TTGGGCATGG GTCTGGGTTT TAGCAGTACT CCTTTGTGTG CTCTGGGTAT CCCCACTGTA
  TTCATACAGC ACCCATGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144960332	ENSMUSSNP2370177	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50934877					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:94203117 () rs orientation: forward

Symbol	Name	Function Class
Lhfpl2	lipoma HMGIC fusion partner-like 2	within coordinates
Rr274132	regulatory region 274132	884 bp proximal
Rr285346	regulatory region 285346	1485 bp proximal
Tssr120664	transcription start site region 120664	1942 bp upstream