rs50935722 SNP Detail

Summary

• ID
  rs50935722
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85342087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTAGTAA ACTCGTACCG
  TGTGCAGGCT GTCTGTTGAG GGTCTTACAT TCATGAATTC ATCCAGTCTA TTCCCCCCCC
  CCCACCTTTT GGTTCCTGTC TTGTAGAGTG AAGTCACTCT GCAAGTGGTG GGTGAAAGGA
  CTAAGCGCTA AATATAGTCA GTGCACCCCC ACGGTCTGCT TTTTTTTTTT TTTAAGATTT
  W
  TTTATTGTTA TAGGTAAGTA CACTGTAGCT GTCTTCAGAC ACATACCCAG AAGAGGTCGT
  CAGATCCCAT TACAGATGGT TGGGAGCCAC TTTGTGGTTG CTAGGATTTG AACTCAGGAT
  CATCTCTCCA GCCCCACCCA CAGTCTGCTT TTAAATCTTA CTGCTCACAC CTTGAACCAG
  ACCAGTGCTC GTTTACAGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146149180	ENSMUSSNP1120232	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50935722					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85342087 () rs orientation: forward

Symbol	Name	Function Class
Rr343448	regulatory region 343448	87 bp distal
Slc3a1	solute carrier family 3, member 1	within coordinates
Tssr146077	transcription start site region 146077	1024 bp downstream