rs50936671 SNP Detail

Summary

• ID
  rs50936671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126775645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTACCCC TTAATTCACT
  TTCATGCTAT GATTTATTTG TAACCTTCAT AGCTTTTTTT TTCTTTTTGT TATTTATTTA
  TTTATTTATT TATTGCTGTT GTTGTTCTTG CTTTCTTTGG AAACATCCTC GACTAGTACT
  GAACTCACTT TGAAGATGAT GGCCTAGAAC TCAGAGATCT TCCTGTATCA TAGGCATAAG
  Y
  CACCATGCCT GAGGTTTTGG GGGTCCCTCC CCCCATTTTC TTATACTCAT CTATGTATCT
  CCCATGCTGC TATCCAGTTA ATGGAAGGAT CCCTCTTTGC TCTGTTGACT GCTGTGTCCT
  TACACACAGA ATATCCAGTG TATACTAGGT TGTCAAATAT TTGTTGGATG ACTATTTAAT
  ACCAAACACT GAATAGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320498576	CHEV_2_126759461	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50936671					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126775645 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			321 bp distal
Gm75308	predicted gene, 75308			within coordinates
Rr564422	regulatory region 564422			638 bp distal
Rr564423	regulatory region 564423			649 bp distal
Rr564424	regulatory region 564424			501 bp distal
Rr564425	regulatory region 564425			within coordinates
Sppl2a	signal peptide peptidase like 2A			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			1819 bp upstream
Tssr26085	transcription start site region 26085			635 bp upstream
Tssr26086	transcription start site region 26086			592 bp upstream
Tssr26087	transcription start site region 26087			561 bp upstream
Tssr26088	transcription start site region 26088			498 bp upstream
Tssr26089	transcription start site region 26089			484 bp upstream
Tssr26090	transcription start site region 26090			142 bp downstream