rs50936750 SNP Detail

Summary

• ID
  rs50936750
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110343669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAACACA GGGTGGGTTG
  ACCTTAGCAG GACCTGGCTG CCGCGGATAC ATCAGGTATA TCCTGCTGGT CTCCACACTC
  AAAGCCATAA GCAGAGACGC AGAGCACTTT GCCAAATATT GGGATATGAA AGAGGCTATG
  TTTGAGAAGT GCGTGGTCAA TAAACGGTAA CTGCACTCAT GGGCCCCCTC CCAGCTAAGT
  W
  TCACCAGAAA ACATCTCTCA GAGGATGGTC CTAGTCTCCA GTCTAGGTAA TTAGAGGGTG
  AGGCCCACAG GCCCGCACCT GGCTGAGTAT GAAATCTCCT CAAAGCCTGG GCCCCAGGGA
  GCCCCTGAGT GCAGAACAGC ACGGCCTAGG CAGAGTCGCT GGCCTTCCCC AGCCTGTCTG
  ATCTCAGGGT GTGGTGGGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss138689942	ENSMUSSNP5733777	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50936750					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110343669 () rs orientation: forward

Symbol	Name	Function Class
Rr472874	regulatory region 472874	1713 bp distal
Rr472875	regulatory region 472875	344 bp distal
Rr472876	regulatory region 472876	467 bp distal
Rr472877	regulatory region 472877	559 bp proximal
Rr472878	regulatory region 472878	623 bp proximal
Rr472879	regulatory region 472879	703 bp proximal
Tssr115196	transcription start site region 115196	1718 bp downstream