rs50936885 SNP Detail

Summary

• ID
  rs50936885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109707995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TATGAAAATC AATGTGGGTG
  Y
  GGTGTTTGAG ATGGGGAAAT CTATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss138683841	ENSMUSSNP1400874	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss324156204	CHEV_12_110979771	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50936885					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109707995 () rs orientation: forward

Symbol	Name	Function Class
Gm54371	predicted gene, 54371	1597 bp downstream
Gm59481	predicted gene, 59481	1949 bp upstream
Mir369	microRNA 369	1857 bp upstream
Mir377	microRNA 377	984 bp downstream
Mir409	microRNA 409	1597 bp upstream
Mir412	microRNA 412	1728 bp upstream
Mir541	microRNA 541	848 bp upstream
Mirc7	microRNA cluster 7, including Mir382 through Mir3072	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc46	microRNA cluster 46, including Mir409 through Mir410	1597 bp proximal
Mirg	miRNA containing gene	within coordinates
Tssr115183	transcription start site region 115183	86 bp upstream
Tssr117762	transcription start site region 117762	58 bp downstream