rs50937356 SNP Detail

Summary

• ID
  rs50937356
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:155095531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCACACCT GAGAAGTCTA TCTGGAGAGC TTCCAGGGAC
  AGGAGGCGAT GCATGCTGTC TTCATTCCCA GCTCACCCTC TCCTTCTCCT CCACCCAGCA
  S
  ACACTGCACA AGGGCCTCCA CTCCTAGACC CTGTCCTGAG TGAAACCAGT CCGTGGACTG
  CCATTCACCC TGCGTTCTCT CCCCTCCTCG GCCCTGGAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145777649	ENSMUSSNP4404799	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50937356					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155095531 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BC034090	cDNA sequence BC034090			Intron
				Noncoding-Transcript-Variant
Rr420977	regulatory region 420977			1723 bp distal
Rr420978	regulatory region 420978			1386 bp distal
Rr420979	regulatory region 420979			517 bp distal