rs50939207 SNP Detail

Summary

• ID
  rs50939207
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97795211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGTACTG GCATTCCACG
  GGGGGGGGGG GGGGGGGGGG GCAGGGAGGG GGGTACAGAG GGAGGAGCTA AAAATTCTAT
  GTCAAAGACG TGCTTACTTT AAAAATGGCA GCCATACAAT CTGTCTCTTC TTTTGGAAAT
  ATTAATATGA CAGATTTTCA TCTTGCTGTT GCTACATGAC GAACACGGGA CCTAATCTGC
  Y
  GGGTGTTTTC TAGGCCAGAG TGGAGGAAGG GTCTGGGTTC AGGTGGAGCT AGCGGCCCAG
  AGCATCCAGC CAACAGGCCC AGGCCGGGCT CCAGTGCTTC AAAGGAAGAA AAGGGCATCA
  CCAATCTCCC TGCTGTTTCC AGCTAAGGCA AATAAATAAA TATCCAAGGA AGAAGAGACT
  AAAAAAGGCA AAGATGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
ss60427118	NES15930604	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
rs50939207					SNP	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60427118	NES15930604	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97795211 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13598	CpG island 13598	280 bp proximal
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	within coordinates
Rr581573	regulatory region 581573	802 bp proximal
Tssr34685	transcription start site region 34685	733 bp downstream
Tssr34686	transcription start site region 34686	791 bp downstream
Tssr34687	transcription start site region 34687	932 bp downstream
Tssr34688	transcription start site region 34688	1016 bp downstream