rs50939804 SNP Detail

Summary

• ID
  rs50939804
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127688103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCC TTAAAACCAA TCCAAAAAGA
  W
  GAACAGGAGA ATATCTCCAT GATGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135874451	ENSMUSSNP3900992	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320957982	CHEV_3_127597372	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50939804					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127688103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	1260 bp proximal
Fam241a	family with sequence similarity 241, member A	Intron
Rr398009	regulatory region 398009	1819 bp upstream
Rr584895	regulatory region 584895	147 bp distal
Rr584896	regulatory region 584896	1544 bp proximal
Rr584897	regulatory region 584897	1824 bp proximal
Tssr35606	transcription start site region 35606	150 bp downstream
Tssr35607	transcription start site region 35607	1054 bp downstream
Tssr35608	transcription start site region 35608	1766 bp downstream
Tssr35609	transcription start site region 35609	1793 bp downstream
Tssr35610	transcription start site region 35610	1817 bp downstream