rs50939954 SNP Detail

Summary

• ID
  rs50939954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22183074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTG GTGACAGTCC TTTTGGTCCT
  R
  TCTTATTTAT AACAGTTTCT ATAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60549027	NES16565551	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	A		G	G		G
ss145294219	ENSMUSSNP6425750	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss325322956	CHEV_17_22101060	CHEVERUD	SCREENING_POP	f	SNP											A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs50939954					SNP	G	A	G	G	G	G	G	A	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60549027	NES16565551	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22183074 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8665	CpG island 8665	1134 bp distal
Gm7805	predicted gene 7805	43 bp downstream
Rr405064	regulatory region 405064	1390 bp downstream
Rr523003	regulatory region 523003	1653 bp distal
Rr523004	regulatory region 523004	1524 bp distal
Rr523005	regulatory region 523005	589 bp distal
Tssr142901	transcription start site region 142901	1341 bp downstream
Tssr142902	transcription start site region 142902	497 bp downstream
Zfp942	zinc finger protein 942	1629 bp upstream
Zfp943	zinc finger prtoein 943	within coordinates