rs50940386 SNP Detail

Summary

• ID
  rs50940386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84210007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTTCTG TCAGATTAGC
  TGGGCAAGAT GTGACAGGCC TCTGTCCTCT GGGGAAATCG CTCCTTTCCT GGGAGGTGGT
  GAGGACATTC CCAGGTTGCT CTGTTCCTGC CCTCTCCCTG CACCCTCCCA GTCTTACCGC
  TTTACCATTG GGGAAAAAAA ATCAGACAGA TTTCTTGTTG TTTTTGAAAA TACATATTCA
  Y
  TCTACAAAGG CTGAGGGAAG CCTGCTAGCT ACAAGGTAGA GGTTTTGCCA GGTTGGGGAC
  TCTTGGAGAC ACAGCTCTTT CTGCCTGTGA AGAGTTTACA GTCATGCGTG TGGGCAGGAT
  GTGTGTATCA GGCAATGTGG TTGCATATAG CAAATTTTTG TGGTTAGCAA GGAGGGGAGA
  ACCTAGTTTA GCCTAAAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146124339	ENSMUSSNP4160416	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50940386					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84210007 () rs orientation: forward

Symbol	Name	Function Class
Rr405491	regulatory region 405491	914 bp upstream
Rr531899	regulatory region 531899	within coordinates
Rr531900	regulatory region 531900	614 bp proximal
Rr531901	regulatory region 531901	966 bp proximal