rs50941233 SNP Detail

Summary

• ID
  rs50941233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58665365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTGGTTT TATAGGTATA
  TTGTCTATAT TTAAGTATAT CACACTGGTG TCCACCTGGT TCATGTGGAA GCCATAACAA
  TTCAGGTACC CTGGAACTTG TAGTTACAGA TGGTGGTGAG CTGCCATGTG GCTTCCGACC
  TAGCTCTCCA GTCTTTGTAA TCCAGTTCTG AGTGACCTAA TTTATATACT AATTTATATG
  Y
  CTTCGTCTTT CTCTTCTCAA GTCACTTAAT AACTATTGGT TCTAAACTAT TAATTTCTTA
  TTTCTTCCTA TACCCTACAT ATACTTCATA ATCTCTTTAT GTTTAGAGTT GCTCTAACTA
  GAGCACACAT TAATTAGCTC CACAGTAGAG AAGTAAAATC AGCCACTGAT GTCATGCCTC
  TGACTCCACA GGAACTCGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss146566744	ENSMUSSNP449571	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs50941233					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58665365 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	648 bp distal
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	1765 bp distal
Rr365894	regulatory region 365894	36 bp proximal
Tssr157271	transcription start site region 157271	1868 bp downstream
Tssr157272	transcription start site region 157272	1852 bp downstream
Tssr157273	transcription start site region 157273	705 bp downstream
Tssr157274	transcription start site region 157274	702 bp downstream
Tssr157275	transcription start site region 157275	670 bp downstream
Tssr157276	transcription start site region 157276	644 bp downstream
Tssr157277	transcription start site region 157277	411 bp downstream
Tssr157278	transcription start site region 157278	203 bp upstream
Tssr157279	transcription start site region 157279	220 bp upstream
Tssr157280	transcription start site region 157280	236 bp upstream
Tssr159961	transcription start site region 159961	1763 bp upstream