rs50941642 SNP Detail

Summary

• ID
  rs50941642
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114633688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TATTCGTTTT CCTCTTCTAA GTGACACAGA AACATCCACA
  ATTTGGTCTT CCTTCTTTAA CTTCATATGA TCTGTGAATT TTATTTTTAG TATACTGAAC
  T
  TTCTGGCTAA TATCCCATTA TTAGTGAGTG AACACAATGT GTGCTCTTTT GTGACTTGGT
  TACCTCACTC AGGATACTTT CAAGTTCCAT CCATTTGCCT G                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138794994	ENSMUSSNP4481248	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50941642					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114633688 () rs orientation: forward

Symbol	Name	Function Class
Gm46322	predicted gene, 46322	1155 bp upstream
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv1-17-1	immunoglobulin heavy variable V1-17-1	1900 bp downstream
Rr473858	regulatory region 473858	1483 bp distal