rs50942006 SNP Detail

Summary

• ID
  rs50942006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153728133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTA GCTATAATTC TAAAGAAACC
  R
  CCTCTTCCTC CACCATCAAC CTGTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145750784	ENSMUSSNP3111196	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50942006					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153728133 () rs orientation: forward

Symbol	Name	Function Class
Teddm2	transmembrane epididymal family member 2	1192 bp upstream
Tssr14286	transcription start site region 14286	1632 bp upstream
Tssr14287	transcription start site region 14287	1343 bp upstream
Tssr14288	transcription start site region 14288	1326 bp upstream
Tssr14289	transcription start site region 14289	1298 bp upstream
Tssr14290	transcription start site region 14290	1213 bp upstream
Tssr14291	transcription start site region 14291	1189 bp upstream