rs50942100 SNP Detail

Summary

• ID
  rs50942100
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40122708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGA GCCACCAACA TCATGCATGC
  A
  TGCCCAGTTT GAGGGGGTGG TCTGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148977317	ENSMUSSNP945023	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50942100					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40122708 () rs orientation: forward

Symbol	Name	Function Class
Gm16894	predicted gene, 16894	within coordinates
Il1r2	interleukin 1 receptor, type II	1164 bp upstream
Rr29353	regulatory region 29353	1692 bp proximal
Tssr62	transcription start site region 62	1162 bp upstream
Tssr6411	transcription start site region 6411	1185 bp upstream
Tssr6412	transcription start site region 6412	1216 bp upstream
Tssr6413	transcription start site region 6413	1227 bp upstream
Tssr6414	transcription start site region 6414	1650 bp upstream