rs50942334 SNP Detail

Summary

• ID
  rs50942334
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9467768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACTTTA GCAGAACAAG
  CCCAGGAGAG CAAGTCAGTA ATGAGTACTC CTTTGTGGGT TTTGCTTCCG TCCTGCCTCC
  AGGCAGCCAC CTTGAGTCCC TCTTGATGGA ATATAAAACT GTAAGCTGAA ACACTCGCCC
  CATCCACATG GGTTTAGTCA GGGTTTTATA CCATCAGCGG AAAATCAAAT AGAATAATCT
  S
  CAAACAAGTG CCCAACTGTG GATCAGTATA GTTGAAATTG CACATAGAAA TCCTATGGAA
  AAATTGTATT TTTTACATTA AACTCTTTGG TTTAGCTTTT ATAGCCTTGA TTTGAGAAAT
  CCTTTTGGTT TCCCAAAGAT TCATGCATTT TATCACTTAG AACGTTTTGG AGCCTGGACT
  TGATTCAGTC AAACTCTCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60369239	NES15871115	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50942334					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60369239	NES15871115	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9467768 () rs orientation: forward

Symbol	Name	Function Class
C030034L19Rik	RIKEN cDNA C030034L19 gene	312 bp upstream
Gm55345	predicted gene, 55345	223 bp downstream
Rr69254	regulatory region 69254	1968 bp distal
Rr82079	regulatory region 82079	within coordinates
Tssr28343	transcription start site region 28343	286 bp upstream
Tssr28344	transcription start site region 28344	341 bp upstream
Tssr28345	transcription start site region 28345	403 bp upstream