rs50942815 SNP Detail

Summary

• ID
  rs50942815
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19040754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG AACCTCCAAC TATTAAGTGA
  Y
  AAAATTACTG TCACTTTCTC TTACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322116872	CHEV_7_19892178	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50942815					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19040754 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18466	CpG island 18466	1462 bp distal
Cpgi18467	CpG island 18467	511 bp proximal
Cpgi18468	CpG island 18468	1431 bp proximal
Fosb	FBJ osteosarcoma oncogene B	within coordinates
Rr400143	regulatory region 400143	1614 bp upstream
Rr643087	regulatory region 643087	1143 bp distal
Rr643088	regulatory region 643088	1357 bp proximal
Tssr2107	transcription start site region 2107	586 bp downstream
Tssr64826	transcription start site region 64826	408 bp upstream
Tssr64827	transcription start site region 64827	500 bp upstream
Tssr70900	transcription start site region 70900	364 bp downstream