rs50944347 SNP Detail

Summary

• ID
  rs50944347
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34613609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCACCTTA AAAACACCAA AGATGCATTC GATTTAAGAG
  GCAGGGAAAG CCTGTGCACC GCGATCCCGG GAGCGGATGC AGAGCCCGGG TTTGGGAGAC
  C
  GGCGCGTTCG TGCCTCGGGT GGGAAACCAC ACTGGTTTGC CGTGCCGGGC ATTCCTCCCG
  ATCGCAGCCC TCAATGTCTC TGGGTGCAAA CTCGCGCAG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss149094956	ENSMUSSNP6277621	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322575458	CHEV_8_35209509	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50944347					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34613609 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20243	CpG island 20243	within coordinates
Leprotl1	leptin receptor overlapping transcript-like 1	within coordinates
Rr661962	regulatory region 661962	1091 bp distal
Rr661963	regulatory region 661963	within coordinates
Rr661964	regulatory region 661964	568 bp proximal
Tssr76861	transcription start site region 76861	1206 bp downstream
Tssr76862	transcription start site region 76862	118 bp downstream
Tssr76863	transcription start site region 76863	88 bp downstream
Tssr76864	transcription start site region 76864	71 bp downstream
Tssr80896	transcription start site region 80896	294 bp upstream
Tssr80897	transcription start site region 80897	126 bp downstream
Tssr80898	transcription start site region 80898	262 bp downstream
Tssr80899	transcription start site region 80899	277 bp downstream
Tssr80900	transcription start site region 80900	298 bp downstream
Tssr80901	transcription start site region 80901	319 bp downstream
Tssr80902	transcription start site region 80902	519 bp downstream
Tssr80903	transcription start site region 80903	563 bp downstream