rs50944511 SNP Detail

Summary

• ID
  rs50944511
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:68917898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGGAAGCCTT GGCCAATCTG AGACTTGCTA TGTAAACTAA
  GTTGGTCTAA ACCTCAAATC CCCTTCCTCT GATCTGGAGT GCTGCAGTTA CAAGCATGTT
  Y
  TTTTTTTTTT GTTTTTGTTT TTTTTGTTTT AGATCACAGT AGCTCAAACT GGCCTCAAGC
  CTCTGTGTAG CCAAAAATGG CCCTTTATCT TCGAGTCTTC C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132347473	ENSMUSSNP2792505	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50944511					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:68917898 () rs orientation: forward

Symbol	Name	Function Class
Ctc1	CTS telomere maintenance complex component 1	within coordinates
Gm74108	predicted gene, 74108	within coordinates
Rr235731	regulatory region 235731	1703 bp proximal
Rr251243	regulatory region 251243	within coordinates
Rr253641	regulatory region 253641	1678 bp proximal
Rr386226	regulatory region 386226	within coordinates
Tssr102357	transcription start site region 102357	1017 bp downstream
Tssr102358	transcription start site region 102358	987 bp downstream
Tssr102359	transcription start site region 102359	238 bp downstream
Tssr102360	transcription start site region 102360	16 bp upstream
Tssr102361	transcription start site region 102361	222 bp upstream
Tssr102362	transcription start site region 102362	268 bp upstream
Tssr102363	transcription start site region 102363	903 bp upstream