rs50945109 SNP Detail

Summary

• ID
  rs50945109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48407681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCTTTTC TTAAGTAGTC
  ACAAAGCTAG GTGACTAGTT GTGAATGATG TAGAGTCTTA TAGTGCAGAC TTGCCGTGTA
  TTAAGGATGG TCTTGAACTC CCCCTTGCCT GGGCCTCCCA GGTGCTGGTG TTTACAGGCG
  CGAGCCATAC ACCAGGCTTG AGTAAGCTGC TCAGTATGGA ATCCAGCTGT GTCTGAGTTC
  Y
  ACAATCCTCC CTGATTCTCT GGGGCTTCTA ATTTAAGCCT CTCTACCCGT GACTACCCTT
  GAATTCATGT TGAGGAAAAA TGTCCTTTAT CACATTGCCA TTCCCCACCA CCTAACTACA
  CCCCCCTTCT GTTTTGTTTT GTTTTGTTTT AGAAATATCT ATAGACTCCC AATCTTTGGG
  GGTGGAGTGT CTCATTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61394047	NES16775904	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50945109					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394047	NES16775904	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48407681 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	24 bp upstream
Cpgi21716	CpG island 21716	361 bp distal
Gm5617	predicted gene 5617	409 bp downstream
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	1082 bp upstream
Rr195326	regulatory region 195326	320 bp proximal
Rr206379	regulatory region 206379	within coordinates
Rr401354	regulatory region 401354	863 bp downstream
Tssr2862	transcription start site region 2862	483 bp upstream
Tssr84988	transcription start site region 84988	1324 bp downstream
Tssr84989	transcription start site region 84989	1266 bp downstream
Tssr84990	transcription start site region 84990	1161 bp downstream
Tssr84991	transcription start site region 84991	1115 bp downstream
Tssr84992	transcription start site region 84992	981 bp downstream
Tssr84993	transcription start site region 84993	930 bp downstream
Tssr84994	transcription start site region 84994	471 bp downstream
Tssr89390	transcription start site region 89390	1973 bp upstream
Tssr89391	transcription start site region 89391	1954 bp upstream
Tssr89392	transcription start site region 89392	1924 bp upstream
Tssr89393	transcription start site region 89393	1392 bp upstream
Tssr89394	transcription start site region 89394	1108 bp upstream
Tssr89395	transcription start site region 89395	1063 bp upstream
Tssr89396	transcription start site region 89396	1046 bp upstream