rs50945200 SNP Detail

Summary

• ID
  rs50945200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:123259894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCTGCTG AAGGTTCCTT
  TAGGGCTTTG TCTGGAAGAA ACATGGTCTA TATTGACAGA ATATCATGCA ATAAATGCAG
  TCCTGAGACA GAAAAATGTG AACATGAATT TTTAAATAAT TTCACTTTGA ACCTACTGAG
  CAGGTTCTAC TTGCGCAGTA GATACAAGTA CAGGTGAAAT CCAGTTTATA GAAGAGAACA
  Y
  AGAGAAAATG GGGCTCCAGG AAGAGTGGAC TAGATCACAA TCTGTTAGGA ACTGAAGTTT
  GACCGGCCTT TCCATATGGA GATGTCCTTG CTGAAGGCCA TGCCATTCTC CCAAGCGGCA
  GGTAAGTTTA AAGACTCAAA GATGCATCTT CCTCACTGTT GGAGAACACA GAAGTGATCT
  ATGTACTGAT AGATAGATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936907	NES16189349	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50945200					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936907	NES16189349	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123259894 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	mRNA-UTR
Tssr58808	transcription start site region 58808	155 bp downstream
Tssr58809	transcription start site region 58809	457 bp upstream
Tssr58810	transcription start site region 58810	483 bp upstream
Tssr58811	transcription start site region 58811	519 bp upstream
Tssr63019	transcription start site region 63019	1363 bp upstream
Tssr63020	transcription start site region 63020	431 bp upstream
Tssr63021	transcription start site region 63021	353 bp upstream
Tssr63022	transcription start site region 63022	314 bp upstream
Tssr63023	transcription start site region 63023	259 bp upstream
Tssr63024	transcription start site region 63024	161 bp upstream
Tssr63025	transcription start site region 63025	129 bp upstream
Tssr63026	transcription start site region 63026	108 bp upstream
Tssr63027	transcription start site region 63027	70 bp upstream
Tssr63028	transcription start site region 63028	45 bp upstream
Tssr63029	transcription start site region 63029	17 bp upstream
Tssr63030	transcription start site region 63030	within coordinates
Tssr63031	transcription start site region 63031	54 bp downstream
Tssr63032	transcription start site region 63032	78 bp downstream
Tssr63033	transcription start site region 63033	103 bp downstream
Tssr63034	transcription start site region 63034	122 bp downstream
Tssr63035	transcription start site region 63035	143 bp downstream
Tssr63036	transcription start site region 63036	197 bp downstream
Tssr63037	transcription start site region 63037	227 bp downstream
Tssr63038	transcription start site region 63038	264 bp downstream
Tssr63039	transcription start site region 63039	323 bp downstream
Tssr63040	transcription start site region 63040	381 bp downstream
Tssr63041	transcription start site region 63041	430 bp downstream
Tssr63042	transcription start site region 63042	455 bp downstream
Tssr63043	transcription start site region 63043	465 bp downstream
Tssr63044	transcription start site region 63044	487 bp downstream
Tssr63045	transcription start site region 63045	578 bp downstream
Tssr63046	transcription start site region 63046	597 bp downstream
Tssr63047	transcription start site region 63047	620 bp downstream
Tssr63048	transcription start site region 63048	648 bp downstream
Tssr63049	transcription start site region 63049	663 bp downstream
Tssr63050	transcription start site region 63050	687 bp downstream
Tssr63051	transcription start site region 63051	739 bp downstream