rs50945218 SNP Detail

Summary

• ID
  rs50945218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53378973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGTCAAA ACAGGCGAAA
  ATACAGCTGT CACTCTGGAC AACAAGATAC TCATATGCAA GCAGCTGCTT AATACACTGC
  AGAAAGGCAG CCTTTAGTGA TATCTAAAAG GTGTGTCAGT GGCAGCGTTT GAGCATTCTG
  TAAAGTTAGG GTATGCCACT TGGAAAGATG AAAGAATACA TGTATTTAGC TCTATACTTA
  Y
  AAGAAGCATA GCCTTTAAAA ATGTATAATA TAGACAAAAA CAGGGCCTTG TACATTTCTT
  TTTTGTTTTA ATAAACCTTT TTGTTTATTG AGCATATTCA CGCATATCCA TTCTATTTGA
  ATATGTTGTA CATGTACATG TACATACTGT GTGTGTGTTT GTGTGTATGT GTTTGTGTGT
  GTGTGTGTTT TTGTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss137751795	ENSMUSSNP4903880	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss324042716	CHEV_12_54433177	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50945218					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53378973 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr267616	regulatory region 267616	1574 bp distal
Rr267617	regulatory region 267617	373 bp distal