rs50945349 SNP Detail

Summary

• ID
  rs50945349
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:30529052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAACTCAA AATATCCTGG
  TAGAAATGTG TGTTTTTACA TTAAAATAAC TGTTCATAAG TCCCTAAGGT ATCACTGGGA
  CAAAAATAAG AATTCACAGT ATCATGTCTC AGGCTGTCTA CAAGTGACAG TTTTAACACA
  TACTGTGTTG TACTTAAATC ATCAGCTACA GTGTGATGTG AAACTCCTTA ACATAGACGC
  R
  TAACTTGGCA AAGACTGCAA GATTCTTCCT TGTCTCCTGT GTCACCCTAA CCCTGGCTTT
  CTACACCTTA TATTAGTATC CACCCCTTAA AATAAAACCA ATTCCTTCTC TGCTTTCTCT
  GGTTTAAAAA GTTTGACTAC ACCTGAGATA CCCACAGAGA AATAGACATC TTTTATTAGA
  TTTGGACTTC TGGGAAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52363816	NES15389158	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs50945349					SNP	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52363816	NES15389158	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:30529052 () rs orientation: forward

Symbol	Name	Function Class
Gm28806	predicted gene 28806	149 bp downstream
Tssr113087	transcription start site region 113087	10 bp upstream