rs50948652 SNP Detail

Summary

• ID
  rs50948652
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106340847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGC CCCAGGGCAG GGGCCCCACC
  C
  CTACAGACCT ATGCTTGGAT GCAGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136936742	ENSMUSSNP6318351	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss323185271	CHEV_9_106365979	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50948652					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106340847 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22267	CpG island 22267	1002 bp distal
Cpgi22268	CpG island 22268	838 bp proximal
Gpr62	G protein-coupled receptor 62	314 bp downstream
Pcbp4	poly(rC) binding protein 4	within coordinates
Tssr86914	transcription start site region 86914	1753 bp downstream
Tssr86915	transcription start site region 86915	444 bp downstream
Tssr86916	transcription start site region 86916	376 bp downstream
Tssr86917	transcription start site region 86917	236 bp downstream
Tssr86918	transcription start site region 86918	97 bp downstream
Tssr86919	transcription start site region 86919	135 bp upstream
Tssr91318	transcription start site region 91318	1237 bp downstream
Tssr91319	transcription start site region 91319	1254 bp downstream
Tssr91320	transcription start site region 91320	1639 bp downstream