rs50951167 SNP Detail

Summary

• ID
  rs50951167
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95033854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAT TGCAGGTGGG CAGCCGCCGG
  W
  CCTTGAAGGT TGGGGATGGG GCTTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135510035	ENSMUSSNP5218585	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320841121	CHEV_3_94930465	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50951167					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95033854 () rs orientation: forward

Symbol	Name	Function Class
Rr580820	regulatory region 580820	1173 bp distal
Tmod4	tropomodulin 4	Intron
Tssr30492	transcription start site region 30492	1983 bp downstream
Tssr30493	transcription start site region 30493	344 bp downstream
Tssr30494	transcription start site region 30494	330 bp downstream
Tssr30495	transcription start site region 30495	316 bp downstream
Tssr30496	transcription start site region 30496	294 bp downstream
Tssr30497	transcription start site region 30497	882 bp upstream