rs50952080 SNP Detail

Summary

• ID
  rs50952080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30326187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCATAAG AAAGGCCACG
  CCCACGCCCA CGCCCAATTT TAATGTACAA ATGAAAGTCC CAGGTCCTAA AGGAGATTTC
  ACTGCAGCCT CAATTGTATG TTCTGTATGT TGGACACAGG TAGCCAGACC TCAGGGCCTG
  GTGGATATAG AACTTGCTCC TGACCGTGCA GGAGGAGGAT GCTGGTTTCT CTGGCATACA
  Y
  GGCACCGACT GCCTTTCCCC AGCCTAGGAG ATTCCCTATG TCTAGGGACC TGTGTTCTGG
  AATCTTTCCC CTCTACCCTC TCTATTCTCA GGCACCTGCT CAGAGCTCTG TAACTAGCAG
  CTAACTCTTG TGTCCTGGAG TTACTCACCT AAGAAGCCCT TGGAGACCAT CTGTTTCAGC
  AGTTCTACGC TGCCACCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61133378	NES16637007	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50952080					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61133378	NES16637007	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30326187 () rs orientation: forward

Symbol	Name	Function Class
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Hadha	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha	within coordinates
Rr122057	regulatory region 122057	25 bp distal
Rr128721	regulatory region 128721	733 bp distal
Tssr50477	transcription start site region 50477	1379 bp upstream
Tssr50478	transcription start site region 50478	951 bp upstream
Tssr50479	transcription start site region 50479	404 bp upstream