rs50952091 SNP Detail

Summary

• ID
  rs50952091
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:61500967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATGGCCA ACTACCAGAG
  TACCAAGAAT TATCTCATAA AAGACAGTAA AAGTCACAGC ATGGAAAATT GGGATGTCCT
  TCAACCAATA GGTTGTCCAG GAATAACAAT TAATTGAGAA ACAGAAAATC AGTGGCACAA
  GTATGATATT GGGTCTCATG GAAATAAGTG ATAAAATCTA AACTCCTTGG CTATACATTA
  Y
  ATGTTAGTTG ATACAGCCAA AGACAGGGAT CAGCCAGATC ATGTAAATGT AACTTCTGGA
  GTATGATTCC CAGTTCCACT TAATGCTAGG ATAAGGCTTC TAAAGCTAGA GCTTCAGATT
  AGGGCCCCCT TGGACTTCTT CAACCGAAAA AAAAATCCTG CCCAGCACCC ATGTAAGTGA
  ATTCACAATC CTCTCTAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss61823452	NES17746812	PERLEGEN	MM_PANEL2	f	SNP	T	C	T		C	T		T
ss324370730	CHEV_13_61454514	CHEVERUD	SCREENING_POP	f	SNP				C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs50952091					SNP	T	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61823452	NES17746812	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:61500967 () rs orientation: forward

Symbol	Name	Function Class
Cts7	cathepsin 7	within coordinates