rs50952269 SNP Detail

Summary

• ID
  rs50952269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40505508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTTGTCA CAGTTGTGGA
  CCAGGAGGTA TTTAGTCTCA CTTGCTGGGC GAATCCTGCT TCACAGATGT AAGTGAAGGA
  GAAGCCACTG CCCAGGCCTG TGTGTGGGCC ACCTCTCTGA AGGTAAGGGC AGACTCTGAT
  GTCCAGTCCT CACTGTCTTC TGCTGTCTGG AGCAAGGAGA GGAACCACCC ACAACGATCC
  Y
  GAAAACAAGG TCAATTGTGA GTGGTGTGTA TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTA TAACTAGTGA GTACAAATGT ATATGTTCTT TGTAGAGAGG TATGAACAGC
  TAAAACACAG CAACAGTTGA TTTGTTCAGC TCTTACCCTC TGCTGACAAT ACACACAGGT
  GTGCTGTATT TTAGTTGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60721673	NES16361079	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50952269					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60721673	NES16361079	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40505508 () rs orientation: forward

Symbol	Name	Function Class
Il1rl1	interleukin 1 receptor-like 1	933 bp downstream
Il18r1	interleukin 18 receptor 1	within coordinates
Rr16188	regulatory region 16188	508 bp distal
Rr29358	regulatory region 29358	107 bp distal
Rr33590	regulatory region 33590	693 bp proximal
Rr33591	regulatory region 33591	1693 bp proximal
Rr371160	regulatory region 371160	9 bp downstream
Tssr6465	transcription start site region 6465	650 bp downstream
Tssr6466	transcription start site region 6466	619 bp downstream
Tssr6467	transcription start site region 6467	373 bp downstream
Tssr6468	transcription start site region 6468	342 bp downstream
Tssr6469	transcription start site region 6469	270 bp downstream
Tssr6470	transcription start site region 6470	237 bp downstream
Tssr6471	transcription start site region 6471	138 bp downstream
Tssr6472	transcription start site region 6472	46 bp downstream