rs50952280 SNP Detail

Summary

• ID
  rs50952280
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37088804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCAACCC CCAGCCCAGT
  CACAACTCCT TAGAGATGCA AATTGAGAGG CAGCCTTCCT AACCAGAGAG GGCTGCTAAT
  TCTCCGACGA GTATGCAGAT TTTCATCTTG CCTTTGCTTG GGTTTATTTG TTTTACTTTG
  CAATAAATTT AATACAGACT CCCTGAAGCA GAGAGGCAGA TGGACTATAA ACTCTGCATT
  Y
  TGAGCAGCCG TACTTACTAG GTTAGTGTGT GTTTTGATCC CTGCTTAAAT TATATCTATG
  AAATTTGACA TGGATTTGGG TCTGGGGTTT GCTGGCTTGT TGGGGCCTCT GGAGCTGTTC
  TTGGGGAATT TACAAGGATT GATTTGATTA CCGGAGCTTT AATTTCTCAC AGAGGCTAAC
  GAGGAGGCCG AGGAGCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61379699	NES16766903	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50952280					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61379699	NES16766903	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37088804 () rs orientation: forward

Symbol	Name	Function Class
Gm67648	predicted gene, 67648	within coordinates
Rr401317	regulatory region 401317	120 bp downstream
Rr676635	regulatory region 676635	1088 bp distal
Rr676636	regulatory region 676636	105 bp distal
Rr676637	regulatory region 676637	228 bp distal
Rr676638	regulatory region 676638	within coordinates
Rr676639	regulatory region 676639	1072 bp proximal