rs50952463 SNP Detail

Summary

• ID
  rs50952463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75369373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAA CTGTTGTCCT GTGGTGTGTT
  R
  GTTGGTGGTT TTGTTATGTA GATTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139749550	ENSMUSSNP2932802	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss324673215	CHEV_14_75531740	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50952463					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75369373 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	1141 bp distal
Cpgi6737	CpG island 6737	673 bp distal
Gm62951	predicted gene, 62951	1312 bp upstream
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Lrrc63	leucine rich repeat containing 63	1052 bp upstream
Rr297500	regulatory region 297500	within coordinates
Tssr4477	transcription start site region 4477	1299 bp upstream
Tssr126606	transcription start site region 126606	783 bp downstream
Tssr126607	transcription start site region 126607	692 bp downstream
Tssr126608	transcription start site region 126608	655 bp downstream
Tssr126609	transcription start site region 126609	370 bp downstream
Tssr126610	transcription start site region 126610	326 bp downstream
Tssr126611	transcription start site region 126611	88 bp upstream
Tssr126612	transcription start site region 126612	113 bp upstream
Tssr129761	transcription start site region 129761	1328 bp upstream
Tssr129762	transcription start site region 129762	1311 bp upstream
Tssr129763	transcription start site region 129763	1284 bp upstream
Tssr129764	transcription start site region 129764	990 bp upstream
Tssr129765	transcription start site region 129765	887 bp upstream
Tssr129766	transcription start site region 129766	351 bp upstream
Tssr129767	transcription start site region 129767	299 bp upstream