rs50953648 SNP Detail

Summary

• ID
  rs50953648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:74874195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGAGAG TAAAAATAGT
  AAAAAGCAAA TTGGTTATTT CAAAGTTACT TCAATTGGAG GATAATTCAT GCCAGCTCAG
  GTTGACTGGT CCCCTTGACT TCCCACAGAA GTCCCAAAGA TCTCTTGTTT TGTTGGAAAA
  CTAGCCCATT CAGAATTCTG TTTGATCATG TGACACCTAG CATAATCTGT TCTAGTCCGA
  Y
  CGACTGGGCC ATAATGCAGA AACTACGTCT TGCATGTTTT ATGTAATACT CTTTACCCCA
  CTGATTGAGT CTGCAGAACA CTGGAAGAAT GAGGTCCTCT TGGACCCCTT TGGGGCCCCC
  TGTGAGCCAG GACCGCATCA TCACCAGCTT CCCTAAGGTA CAGTCATTAG AACACCTTTG
  TTGTTTTGTT TTGTTTTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ
ss52365263	NES15274472	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ
rs50953648					SNP	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52365263	NES15274472	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:74874195 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1716	CpG island 1716	917 bp distal
Rab36	RAB36, member RAS oncogene family	within coordinates
Rr433913	regulatory region 433913	1264 bp distal
Rr433914	regulatory region 433914	517 bp distal
Tssr94068	transcription start site region 94068	1263 bp downstream
Tssr94069	transcription start site region 94069	1075 bp downstream
Tssr94070	transcription start site region 94070	1031 bp downstream