rs50954390 SNP Detail

Summary

• ID
  rs50954390
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60721984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTTGAAT GAGAATTGAT
  GGGGAGATAG ATTTAATTAA CCCCAGTGTC AGCAGCTGCC GGGCTACCGG TTTGTGTGTT
  AATAGAGCGG CCACCCGGGC TCTCCAGGGC TTTTCTGGGA GTCTGAGGCC AGCGGAGCAA
  TTGTGCTTGT CAGCATAGGT GGATAAATGA AGAGAGGCAG AACAGTGCTC AGCCTGGACT
  R
  GCCTCTCTCT CACTCTAAGA CCAACCAGTC ACCTTGTTGG TCACGATGGG GCCACCTGGC
  TCAGCTCCTT CATTGGGATG TCTGTGCTGG GCAAGGATGA GGGCTGAGAC AAGTACCCTG
  CTGGCTCCAT CAGCATCAGA GGTCCCTGAT GCCCCCTATC CTTGGGGGAC CTCTGGGTCA
  GTGCTTGGCC TGAAGGCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61278417	NES16780549	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50954390					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61278417	NES16780549	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60721984 () rs orientation: forward

Symbol	Name	Function Class
Gm66331	predicted gene, 66331	1193 bp downstream
Rr432237	regulatory region 432237	637 bp distal
Rr432238	regulatory region 432238	within coordinates