rs50954468 SNP Detail

Summary

• ID
  rs50954468
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:93731919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCC TTCATGTGCT TACCCAGCAA
  G
  ACACCATCCA ACCAACTTTC TAAAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147372023	ENSMUSSNP6071796	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss323405831	CHEV_10_93358802	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50954468					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93731919 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930471D02Rik	RIKEN cDNA 4930471D02 gene			1092 bp upstream
Metap2	methionine aminopeptidase 2			Intron
				Noncoding-Transcript-Variant
Rr437346	regulatory region 437346			833 bp proximal
Rr437347	regulatory region 437347			1367 bp proximal
Tssr95291	transcription start site region 95291			1099 bp upstream
Tssr95292	transcription start site region 95292			1107 bp upstream