rs50954987 SNP Detail

Summary

• ID
  rs50954987
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:24791096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTGTTTTA GAGACGATTA TTTGTATGCC CTGTAGGAAA
  ATCTGTATAT ATTCATATAT AGTGGTATGG TATGTACATG GGTAAGTATG TTACATGTGA
  K
  TGGAAAGATG CAGACAACAG AATTTTATTA TAAAGAGTTT ATTATACATC TTTTGAACAG
  CGTGGATATA GGCTACCTCT CTGGATACCT TTGCTTCCAA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61262555	NES16880307	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	T	T	T	G	G	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50954987					SNP	T	G	G	T	T	T	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262555	NES16880307	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24791096 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	9 bp downstream
Med23	mediator complex subunit 23	1738 bp downstream
Tssr92746	transcription start site region 92746	422 bp upstream
Tssr92747	transcription start site region 92747	495 bp upstream
Tssr97085	transcription start site region 97085	294 bp downstream
Tssr97086	transcription start site region 97086	340 bp downstream
Tssr97087	transcription start site region 97087	374 bp downstream
Tssr97088	transcription start site region 97088	432 bp downstream
Tssr97089	transcription start site region 97089	451 bp downstream
Tssr97090	transcription start site region 97090	482 bp downstream
Tssr97091	transcription start site region 97091	873 bp downstream
Tssr97092	transcription start site region 97092	893 bp downstream
Tssr97093	transcription start site region 97093	917 bp downstream
Tssr97094	transcription start site region 97094	933 bp downstream
Tssr97095	transcription start site region 97095	947 bp downstream
Tssr97096	transcription start site region 97096	1212 bp downstream
Tssr97097	transcription start site region 97097	1486 bp downstream
Tssr97098	transcription start site region 97098	1634 bp downstream