rs50955177 SNP Detail

Summary

• ID
  rs50955177
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56260870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACAGAGT GAATTCCAGG
  ACAGTCAGGG CTACACAGAG AAACCCTGTC TCGAAAAACC AAAAAAAAAA AAAAACAAAA
  AAACAAAAAA ACCTCAGTTT TCTCATCTAG AAATTGAGCT AAGAACCTTG GGGTTTGTAG
  TAAGTATAGG AGCTCATGCT TCCATGCATA ACAGGTCCTA CATGGCCTAC GGAAGCTCCT
  K
  TTCCTTTGTC TCCTCCAGCT CTCGTGGCTC TAAGCCAGCC CAGAGTGCAA TGCCATGCTT
  CTCGGTATCC CGTGGCCGTG GACTGCTCCT GGACTCCTCT CCAGGCTCCC AACTCCACCA
  GATCCACGTC CTTCATTGCC ACTTACAGGT CAGAAAATGG AAAGGGTTTA GGAGGAAGCC
  AAGTATCAAG AGATTCCAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62801957	NES17366687	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50955177					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62801957	NES17366687	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56260870 () rs orientation: forward

Symbol	Name	Function Class
Ebi3	Epstein-Barr virus induced gene 3	within coordinates
Gm16712	predicted gene, 16712	901 bp downstream
Rr340009	regulatory region 340009	669 bp distal
Tssr145247	transcription start site region 145247	1171 bp downstream
Tssr145248	transcription start site region 145248	1145 bp downstream
Tssr145249	transcription start site region 145249	1131 bp downstream
Tssr145250	transcription start site region 145250	1112 bp downstream
Tssr145251	transcription start site region 145251	1088 bp downstream
Tssr145252	transcription start site region 145252	1074 bp downstream
Tssr145253	transcription start site region 145253	1056 bp downstream
Tssr145254	transcription start site region 145254	1032 bp downstream
Tssr145255	transcription start site region 145255	1008 bp downstream
Tssr145256	transcription start site region 145256	24 bp upstream
Tssr145257	transcription start site region 145257	448 bp upstream
Tssr145258	transcription start site region 145258	470 bp upstream