rs50956724 SNP Detail

Summary

• ID
  rs50956724
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102283020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCCACTT GGCTTTCCCA
  TTTTAAAGAA AGTTCAATAT GTAGAGATAG GGATATCTAG ATAGATATAA ACACTTATTG
  TCAACATTCT CACCTTGTTT TTAAGTTGTC ATTTAGTCAG TCACTTTATT CCCAATTATA
  AATTTCTCCC AAACAAAGGA AAATAAACAA TTGTTTTACT AGTTTAGTGT AAAGGAAAAA
  R
  GACTAGTGGG AAGTGGGGCA GTGAAGAAAA AAACAAACCA ACACATTATA AAAACTGATG
  CATCTTCCTC CAGACTTTCT TGGATTTAAT TTACCAGCAA ATCTCTTGGA AACAAACTGA
  ATCTTTCCTT TCCCTTCTTG TATCCCATAT TTCAAACTGG AGATTCTTAG TCATAAGATC
  AGAGCCGTGA GGGGTCCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320437749	CHEV_2_102292832	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50956724					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102283020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	395 bp distal
Fjx1	four jointed box 1	883 bp upstream
Rr561694	regulatory region 561694	1915 bp distal
Rr561695	regulatory region 561695	1331 bp distal
Rr561696	regulatory region 561696	86 bp distal
Rr561697	regulatory region 561697	768 bp proximal
Rr561698	regulatory region 561698	895 bp proximal
Tssr25397	transcription start site region 25397	901 bp upstream
Tssr25398	transcription start site region 25398	860 bp upstream
Tssr25399	transcription start site region 25399	832 bp upstream