rs50956904 SNP Detail

Summary

• ID
  rs50956904
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22713960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCCGTT CTTGTGGGCG
  AACATTGTCC CCGTGGCTGT GACTTGGTGA CCTTCATACA GCTGCTTGAA GGCTTAGAGA
  AGAAGTCATG CTACATTGGA GCACTAGGAG CCCTTTCTAA ATAAGCAAGC TGTTGTGAGT
  ACACTGGAGA GCTGCAGTTG AGACCCTGCT ATCTTCCCGC CCAGACTCTG CAGAGGACGT
  K
  CGTAAGTTGT GCCCACGGTG CCCACTCCTG ACTCCGTTCA ACGATACCAA CGTGGTCCAC
  ACCGTCAACA CTGCCCTGGC TGCCTTCAAC ACACAGAATA ATGGAACCTA TTTTAAACTG
  GTGGAGATTT CCCGGGCTCA AAATGTGGTA AAAACTTAAC ACTCTTTTGA TAGATTTGGG
  CGATTTGGTG GCCCTTGGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss63681319	NES17064330	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T		G	T	G		G
ss325113555	CHEV_16_22895283	CHEVERUD	SCREENING_POP	f	SNP										T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50956904					SNP	T	T	T	T	T	T	G	T	T	T	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63681319	NES17064330	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22713960 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	824 bp upstream
Rr513336	regulatory region 513336	880 bp distal
Rr513337	regulatory region 513337	414 bp distal
Tssr4819	transcription start site region 4819	121 bp upstream
Tssr4820	transcription start site region 4820	737 bp upstream
Tssr137563	transcription start site region 137563	969 bp downstream
Tssr137564	transcription start site region 137564	939 bp downstream
Tssr137565	transcription start site region 137565	802 bp downstream
Tssr137566	transcription start site region 137566	793 bp downstream
Tssr137567	transcription start site region 137567	425 bp downstream
Tssr137568	transcription start site region 137568	394 bp downstream
Tssr137569	transcription start site region 137569	373 bp downstream
Tssr137570	transcription start site region 137570	356 bp downstream
Tssr137571	transcription start site region 137571	18 bp downstream
Tssr137572	transcription start site region 137572	within coordinates
Tssr137573	transcription start site region 137573	83 bp upstream
Tssr137574	transcription start site region 137574	104 bp upstream
Tssr137575	transcription start site region 137575	110 bp upstream
Tssr137576	transcription start site region 137576	790 bp upstream
Tssr137577	transcription start site region 137577	1212 bp upstream
Tssr137578	transcription start site region 137578	1283 bp upstream
Tssr140504	transcription start site region 140504	818 bp upstream
Tssr140505	transcription start site region 140505	769 bp upstream
Tssr140506	transcription start site region 140506	349 bp upstream
Tssr140507	transcription start site region 140507	3 bp downstream
Tssr140508	transcription start site region 140508	47 bp downstream
Tssr140509	transcription start site region 140509	66 bp downstream
Tssr140510	transcription start site region 140510	81 bp downstream
Tssr140511	transcription start site region 140511	124 bp downstream
Tssr140512	transcription start site region 140512	1347 bp downstream
Tssr140513	transcription start site region 140513	1358 bp downstream
Tssr140514	transcription start site region 140514	1391 bp downstream