rs50957558 SNP Detail

Summary

• ID
  rs50957558
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153621367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTGATTCT CGTAGAGGAG CTTGGGAGTG CGCTCCCTGT
  TCCTAAAAGG ACTCCAAACC GTATTTCCGT TCTTCCAAGG TCTGAACTGG CATCTGCAGC
  W
  GGCTGGAAAG GGCAGATAGT GCTTAGACCT CAGGATGTCC CCGGCCAAAC TGTCACCAGC
  TGGAGCTATC AGCCACTTCC GCCCTACCTT ACCTAGTGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148003954	ENSMUSSNP3592929	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50957558					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153621367 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	93 bp distal
Efcab8	EF-hand calcium binding domain 8	484 bp upstream
Gm75501	predicted gene, 75501	within coordinates
Rr567738	regulatory region 567738	within coordinates
Rr567739	regulatory region 567739	276 bp proximal
Tssr20916	transcription start site region 20916	212 bp downstream
Tssr20917	transcription start site region 20917	196 bp downstream
Tssr20918	transcription start site region 20918	168 bp downstream