rs50958451 SNP Detail

Summary

• ID
  rs50958451
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63081548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGAAAACC TAATTTCATT
  AGAGTACTTA TATAGCAGAG TTAAAGCCAG TTACTGTTTT AAGTTTTGCA AAGAATAGTA
  GAAGGTGATG TCATTTCCTA AACATTTGTA TATGGCCCTT TAAAACTGAG AGAACTGACT
  GTCACCCCAA GCATATTATA AGTATTAAAC AAGTGCAGTC CTCATTTTAG CTTAACACTC
  R
  ATGAGAGAGC AGCTTGCTTT GAGGTCTTAC TAACTTTTGT TTTTCTCCTC AGACATAGGG
  TACCTCCCAG TTTCCAGTGT TTCAGAAGGG ACTTTTGTAT TGAAACTGGA AGACCAAGGT
  CATTCCAAGC ATGTTGTGCT GGGGCAATGC ATCCTATGGA CAACTAGGTT TGGGAGGAAT
  TGATGAAGAA ATTGTACTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52347383	NES15279477	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50958451					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52347383	NES15279477	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63081548 () rs orientation: forward

Symbol	Name	Function Class
1700120B22Rik	RIKEN cDNA 1700120B22 gene	1616 bp upstream
Cpgi1647	CpG island 1647	1191 bp distal
Gm66860	predicted gene, 66860	1742 bp downstream
Herc4	hect domain and RLD 4	within coordinates
Rr432766	regulatory region 432766	1836 bp distal
Rr432767	regulatory region 432767	1153 bp distal
Rr432768	regulatory region 432768	650 bp distal
Rr432769	regulatory region 432769	803 bp distal
Rr432770	regulatory region 432770	1744 bp proximal
Tssr93750	transcription start site region 93750	1998 bp downstream
Tssr93751	transcription start site region 93751	1923 bp downstream
Tssr93752	transcription start site region 93752	1805 bp downstream
Tssr93753	transcription start site region 93753	1783 bp downstream
Tssr93754	transcription start site region 93754	1756 bp downstream
Tssr97911	transcription start site region 97911	1599 bp upstream