rs50958528 SNP Detail

Summary

• ID
  rs50958528
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:45006256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTG TTTTCCAATT CCCGGCAGCC
  G
  GACCCGGAGC CTGTCCCCCC ATTCA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss146484893	ENSMUSSNP3606338	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320273562	CHEV_2_44971764	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs50958528					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:45006256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11634	CpG island 11634	430 bp proximal
Gm28643	predicted gene 28643	1961 bp upstream
Rr373117	regulatory region 373117	within coordinates
Rr556443	regulatory region 556443	1236 bp distal
Rr556444	regulatory region 556444	within coordinates
Rr556445	regulatory region 556445	1141 bp proximal
Tssr17636	transcription start site region 17636	987 bp upstream
Tssr23988	transcription start site region 23988	720 bp downstream
Tssr23989	transcription start site region 23989	1057 bp downstream
Tssr23990	transcription start site region 23990	1105 bp downstream
Tssr23991	transcription start site region 23991	1156 bp downstream
Tssr23992	transcription start site region 23992	1182 bp downstream
Tssr23993	transcription start site region 23993	1279 bp downstream
Zeb2	zinc finger E-box binding homeobox 2	Intron