rs50960553 SNP Detail

Summary

• ID
  rs50960553
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55169303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTA GCAGCTATCC TTGTTGTGAG
  C
  TTTGTTCCTG GGGCTCTATG AACAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139573295	ENSMUSSNP3164284	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss324640921	CHEV_14_55550683	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50960553					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55169303 () rs orientation: forward

Symbol	Name	Function Class
Il25	interleukin 25	849 bp upstream
Rr389680	regulatory region 389680	948 bp downstream
Rr492369	regulatory region 492369	1084 bp distal
Tssr125681	transcription start site region 125681	1198 bp upstream