rs50961449 SNP Detail

Summary

• ID
  rs50961449
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:117496343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCATACT TTCACAGGAA
  GCTCTTTGCG AACCGAATCC TCTCTCCAGC CTTAAGCGAG GTTTTCAGTG CAAGAGTTAA
  TGTGGGCAAT ACAGTTCCCA TCACTAAGAA AGGAAGTGTT TACCAAGATA ATTCCCTTGC
  ACGTGAATGC GGCTTAATCC TGAATGAACC GCTGAGAAAG TGGGTCCACT AGCTGTTATG
  K
  TGCCCCCAAA CATCAGGATC CAGGGCGCTC ATACACACGT GTGTGCCACT CACCATTGGT
  CCTTGATGGA GGACCAGCAA ACGGGCTATT TTGAGAGCAC CGTCAGTCTT CTAGACCTGG
  GGAAAAGTCC TCCCAGCGGT CTGTGGAAGT CAGTGGGGGC CCTCTGACAT CCTCAGACAC
  AAAGGATCCG TGCCAGGCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61234281	NES16850620	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T	T	T	T		T	T	T		T
ss323214889	CHEV_9_117576393	CHEVERUD	SCREENING_POP	f	SNP										G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs50961449					SNP	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61234281	NES16850620	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:117496343 () rs orientation: forward

Symbol	Name	Function Class
Rbms3	RNA binding motif, single stranded interacting protein	within coordinates
Rr193213	regulatory region 193213	858 bp proximal