rs50962478 SNP Detail

Summary

• ID
  rs50962478
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127293533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTACCAGG AGTAGGGAAA
  ATCGCCATCC AAGTACCTCT TTAGTGATGT CCCACTGAGA TGGAAATTTC ATTTGTTTGT
  TTTTAATAGC AGCAAGAGCT GGAATGTAGC TCAGTATATC ACATATTTGC TTGCTATGAA
  TGAAGCCTTG GGTGCGATCC CCAGCTATGG ATAAACTAGG CGTGGCTGTG CATGTCTGCC
  R
  TCCCAGTACT TGGGAGGCAG AGATGGAAAA ATCAGAAGTT CAAGGTCATC TTTGGCTCTA
  CAGTGAGTTC GAGGCCAGCT TGTGGTACAT GGGACCATGT ATAAACAAAC AAACAAACAA
  ATAAATAAAT AAAATCTAGC AAAATGACTT TCATGAGACG AGTTGTCCTC TCTCCTGCCA
  TTTATTTTCC ATTTCCTATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135865119	ENSMUSSNP6640309	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320954695	CHEV_3_127202802	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50962478					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127293533 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	534 bp upstream
Cpgi13791	CpG island 13791	475 bp distal
Rr584800	regulatory region 584800	393 bp distal
Tssr35576	transcription start site region 35576	846 bp upstream
Tssr35577	transcription start site region 35577	813 bp upstream
Tssr35578	transcription start site region 35578	791 bp upstream
Tssr35579	transcription start site region 35579	747 bp upstream