rs50962927 SNP Detail

Summary

• ID
  rs50962927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91191615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAATCCT TGGCTTCAAC
  AGCCAGCTTC AAAGAATTCA GTGTGCTAGG AACAGCAGCC AACTGGGTGC AGCTAGTTGC
  ACCCAGCCAG CCCTGCACCA AAGCCAGAGA ACAAAGATGA AGGAAGGAGG CAAGGATGCG
  GAGGAGATTC TTCAAGTGAC TTCCCAGGAG GAATCTCAGT CCAGCCACAC CCAGTTCCTT
  Y
  CTCCTGGTAA ATAACTCAGC AAAACTCCAA ACGGGCTTAG CCGAGTCCCT GCAGGAATGA
  ACCTCTCCCA AGGAGTAGGG GATTTCTCCC TGGCTGCTGC TCCAAGCGAC TCTCCCACCC
  AAGCCTGCCT GAAGGGGAAG TGTGTGCTTT CTGCAAGTCA CAGCATGTTT ATCACAGGAG
  CAAACAAACA GCAAACAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146924404	ENSMUSSNP2195427	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50962927					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91191615 () rs orientation: forward

Symbol	Name	Function Class
Cstpp1	centriolar satellite-associated tubulin polyglutamylase complex regulator 1	within coordinates
Rr373536	regulatory region 373536	within coordinates
Rr560718	regulatory region 560718	within coordinates