rs50963406 SNP Detail

Summary

• ID
  rs50963406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10610618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCAGCGC CCCCTGTTGG
  TGGCGGCTTG TCCACGCGGT CATCTCCGGC CACACACCCA CTTTGGGGCC AGTTGGATGG
  CTCAAAAGGT GAACCTGCCT GCGGCCAAAT AATACAACTG AGTTCGACCC CTGTGAGCCC
  CGTGATGGAA GAAGAAAGAG AACTAACTCC TGCAGATTGT CCTCTGACTT AAACATGCCA
  R
  CCATTGCATA CGCACCCGCA CATACATAAA TGAAAACTGT TTTTTGTTTT TTTACAAGAC
  AGGGTTTCTC TGTATAGCCC TGGCTGTCCT GGAACTCACT TGTAGACCAG GCTGGCCTCG
  AACTCAGAAA TCCGCCCGCC TCTGCCTCCC AAGTGCTGGG ATTAAAGGCG TGCACCACCA
  CTGCCCGGCT AAATGAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146607076	ENSMUSSNP339457	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325524296	CHEV_18_10610616	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50963406					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10610618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	within coordinates
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	266 bp upstream
Rr533778	regulatory region 533778	520 bp distal
Rr533779	regulatory region 533779	842 bp distal
Rr533780	regulatory region 533780	within coordinates
Rr533781	regulatory region 533781	482 bp distal
Rr533782	regulatory region 533782	176 bp distal
Tssr152429	transcription start site region 152429	502 bp upstream
Tssr152430	transcription start site region 152430	474 bp upstream
Tssr152431	transcription start site region 152431	330 bp upstream
Tssr152432	transcription start site region 152432	306 bp upstream
Tssr152433	transcription start site region 152433	255 bp upstream